Calling a python script (emboss_needle.py) with parameters in knime

Hi there,

I’m trying to get knime to execute a python script (or java, or perl) from the EMBL-EBI github repository. In my case emboss_needle.py and the latest knime version (SeqAn is therefore not available right now)

Let’s say this is my command: “python emboss_needle.py --email [ilove@knime.com](mailto:ilove@knime.com) --stype protein --asequence KNIME --bsequence KNIMD” to compare two sequences. On the cmd line in my conda environment it works, for the life of me I just don’t find a solution that lets me port this to knime.

Any suggestions?

Best,

Christoph